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» The Linear Complexity of a Graph
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BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
MICRO
2009
IEEE
132views Hardware» more  MICRO 2009»
16 years 2 months ago
Finding concurrency bugs with context-aware communication graphs
Incorrect thread synchronization often leads to concurrency bugs that manifest nondeterministically and are difficult to detect and fix. Past work on detecting concurrency bugs ...
Brandon Lucia, Luis Ceze
BMCBI
2010
148views more  BMCBI 2010»
15 years 7 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...
ICFP
2007
ACM
16 years 7 months ago
Termination analysis and call graph construction for higher-order functional programs
The analysis and verification of higher-order programs raises the issue of control-flow analysis for higher-order languages. The problem of constructing an accurate call graph for...
Damien Sereni
SIGMOD
2010
ACM
260views Database» more  SIGMOD 2010»
16 years 12 days ago
Towards proximity pattern mining in large graphs
Mining graph patterns in large networks is critical to a variety of applications such as malware detection and biological module discovery. However, frequent subgraphs are often i...
Arijit Khan, Xifeng Yan, Kun-Lung Wu