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BMCBI
2004
95views more  BMCBI 2004»
15 years 6 months ago
PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of or
Background: The rapidly increasing number of completely sequenced genomes led to the establishment of the COG-database which, based on sequence homologies, assigns similar protein...
Florian Meereis, Michael Kaufmann
BMCBI
2010
189views more  BMCBI 2010»
15 years 5 months ago
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database
Background: A common approach to understanding the genetic basis of complex traits is through identification of associated quantitative trait loci (QTL). Fine mapping QTLs require...
Isaak Y. Tecle, Naama Menda, Robert M. Buels, Esth...
KBSE
2010
IEEE
15 years 4 months ago
An experience report on scaling tools for mining software repositories using MapReduce
The need for automated software engineering tools and techniques continues to grow as the size and complexity of studied systems and analysis techniques increase. Software enginee...
Weiyi Shang, Bram Adams, Ahmed E. Hassan
BMCBI
2010
162views more  BMCBI 2010»
15 years 4 months ago
SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels
Background: Expression levels for 47294 transcripts in lymphoblastoid cell lines from all 270 HapMap phase II individuals, and genotypes (both HapMap phase II and III) of 3.96 mil...
Kristian Holm, Espen Melum, Andre Franke, Tom H. K...
KDD
2002
ACM
182views Data Mining» more  KDD 2002»
16 years 7 months ago
ANF: a fast and scalable tool for data mining in massive graphs
Graphs are an increasingly important data source, with such important graphs as the Internet and the Web. Other familiar graphs include CAD circuits, phone records, gene sequences...
Christopher R. Palmer, Phillip B. Gibbons, Christo...