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ALMOB
2006
138views more  ALMOB 2006»
15 years 7 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
ALMOB
2006
89views more  ALMOB 2006»
15 years 7 months ago
On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the ...
Katharina Anna Lehmann, Michael Kaufmann, Stephan ...
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BMCBI
2007
93views more  BMCBI 2007»
15 years 7 months ago
The topology of metabolic isotope labeling networks
Background: Metabolic Flux Analysis (MFA) based on isotope labeling experiments (ILEs) is a widely established tool for determining fluxes in metabolic pathways. Isotope labeling ...
Michael Weitzel, Wolfgang Wiechert, Katharina N&ou...
JCB
2006
124views more  JCB 2006»
15 years 7 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
JMLR
2006
389views more  JMLR 2006»
15 years 7 months ago
A Very Fast Learning Method for Neural Networks Based on Sensitivity Analysis
This paper introduces a learning method for two-layer feedforward neural networks based on sensitivity analysis, which uses a linear training algorithm for each of the two layers....
Enrique Castillo, Bertha Guijarro-Berdiñas,...
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