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BMCBI
2008
169views more  BMCBI 2008»
15 years 7 months ago
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Background: The regulation of gene expression is complex and occurs at many levels, including transcriptional and post-transcriptional, in metazoans. Transcriptional regulation is...
Christina Chaivorapol, Collin Melton, Grace Wei, R...
CANDC
2004
ACM
15 years 7 months ago
iProLINK: an integrated protein resource for literature mining
The exponential growth of large-scale molecular sequence data and of the PubMed scientific literature has prompted active research in biological literature mining and information ...
Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hon...
BMCBI
2010
123views more  BMCBI 2010»
15 years 2 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
AMR
2005
Springer
137views Multimedia» more  AMR 2005»
16 years 25 days ago
Information Retrieval of Sequential Data in Heterogeneous XML Databases
The XML language is a W3C standard sustained by both the industry and the scientific community. Therefore, the available information annotated in XML keeps and will keep increasing...
Eugen Popovici, Pierre-Francois Marteau, Gildas M&...
ICDE
2006
IEEE
188views Database» more  ICDE 2006»
16 years 8 months ago
Efficiently Evaluating Order Preserving Similarity Queries over Historical Market-Basket Data
We introduce a new domain-independent framework for formulating and efficiently evaluating similarity queries over historical data, where given a history as a sequence of timestam...
Reza Sherkat, Davood Rafiei