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BIOINFORMATICS
2011
15 years 2 months ago
Inverse perturbation for optimal intervention in gene regulatory networks
Motivation: Analysis and intervention in the dynamics of gene regulatory networks is at the heart of emerging efforts in the development of modern treatment of numerous ailments i...
Nidhal Bouaynaya, Roman Shterenberg, Dan Schonfeld
CADE
2009
Springer
16 years 2 months ago
Interpolant Generation for UTVPI
Abstract. The problem of computing Craig interpolants in SMT has recently received a lot of interest, mainly for its applications in formal verification. Efficient algorithms for ...
Alessandro Cimatti, Alberto Griggio, Roberto Sebas...
FOCS
2004
IEEE
15 years 11 months ago
An Optimal Randomised Cell Probe Lower Bound for Approximate Nearest Neighbour Searching
We consider the approximate nearest neighbour search problem on the Hamming cube {0, 1}d. We show that a randomised cell probe algorithm that uses polynomial storage and word size...
Amit Chakrabarti, Oded Regev
SAC
2009
ACM
16 years 2 months ago
A new protein motif extraction framework based on constrained co-clustering
Signal finding (pattern discovery) in biological sequences is a fundamental problem in both computer science and molecular biology. Many approaches have been proposed for extract...
Francesca Cordero, Alessia Visconti, Marco Botta
CCGRID
2009
IEEE
16 years 2 months ago
Improving Parallel Write by Node-Level Request Scheduling
In a cluster of multiple processors or cpu-cores, many processes may run on each compute node. Each process tends to issue contiguous I/O requests for snapshot, checkpointing or s...
Kazuki Ohta, Hiroya Matsuba, Yutaka Ishikawa