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183
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COMPGEOM
2003
ACM
16 years 7 days ago
Cache-oblivious data structures for orthogonal range searching
We develop cache-oblivious data structures for orthogonal range searching, the problem of finding all T points in a set of N points in Êd lying in a query hyper-rectangle. Cache...
Pankaj K. Agarwal, Lars Arge, Andrew Danner, Bryan...
201
Voted
CP
2008
Springer
15 years 8 months ago
Search Strategies for Rectangle Packing
Rectangle (square) packing problems involve packing all squares with sizes 1 × 1 to n × n into the minimum area enclosing rectangle (respectively, square). Rectangle packing is a...
Helmut Simonis, Barry O'Sullivan
BMCBI
2008
87views more  BMCBI 2008»
15 years 7 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
BMCBI
2007
91views more  BMCBI 2007»
15 years 7 months ago
A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
Background: Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) has become one of the most used tools in mass spectrometry based proteomics. Various algorithms ...
Hua Xu, Michael A. Freitas
240
Voted
BMCBI
2004
112views more  BMCBI 2004»
15 years 6 months ago
A double classification tree search algorithm for index SNP selection
Background: In population-based studies, it is generally recognized that single nucleotide polymorphism (SNP) markers are not independent. Rather, they are carried by haplotypes, ...
Peisen Zhang, Huitao Sheng, Ryuhei Uehara