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BMCBI
2004
130views more  BMCBI 2004»
15 years 7 months ago
PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability
Background: Regulatory regions that function in DNA replication and gene transcription contain specific sequences that bind proteins as well as less-specific sequences in which th...
Yanlin Huang, David Kowalski
242
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ACST
2006
15 years 9 months ago
PDC: Pattern discovery with confidence in DNA sequences
Pattern discovery in DNA sequences is one of the most challenging tasks in molecular biology and computer science. The main goal of pattern discovery in DNA sequences is to identi...
Yi Lu, Shiyong Lu, Farshad Fotouhi, Yan Sun, Zijia...
BMCBI
2007
106views more  BMCBI 2007»
15 years 7 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
ICDM
2009
IEEE
259views Data Mining» more  ICDM 2009»
15 years 5 months ago
Topic Modeling for Sequences of Temporal Activities
: Topic Modeling for Sequences of Temporal Activities Zhi-Yong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-Dong Shen HP Laboratories HPL-2010-160 topic modeling, LDA, sequence, temp...
Zhiyong Shen, Ping Luo, Yuhong Xiong, Jun Sun, Yi-...
FCT
2007
Springer
16 years 1 months ago
Complexity of Pebble Tree-Walking Automata
We consider tree-walking automata using k pebbles. The pebbles are either strong (can be lifted from anywhere) or weak (can be lifted only when the automaton is on it). For each k,...
Mathias Samuelides, Luc Segoufin