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POPL
2008
ACM
16 years 8 months ago
Generating precise and concise procedure summaries
We present a framework for generating procedure summaries that are precise -- applying the summary in a given context yields the same result as re-analyzing the procedure in that ...
Greta Yorsh, Eran Yahav, Satish Chandra
POPL
2008
ACM
16 years 8 months ago
High-level small-step operational semantics for transactions
Software transactions have received significant attention as a way to simplify shared-memory concurrent programming, but insufficient focus has been given to the precise meaning o...
Katherine F. Moore, Dan Grossman
RECOMB
2008
Springer
16 years 8 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
RECOMB
2008
Springer
16 years 8 months ago
Constructing Treatment Portfolios Using Affinity Propagation
A key problem of interest to biologists and medical researchers is the selection of a subset of queries or treatments that provide maximum utility for a population of targets. For ...
Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vla...
211
Voted
RECOMB
2008
Springer
16 years 8 months ago
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins
Abstract. In engineering protein variants by constructing and screening combinatorial libraries of chimeric proteins, two complementary and competing goals are desired: the new pro...
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg
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