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HPCA
2006
IEEE
16 years 7 months ago
CORD: cost-effective (and nearly overhead-free) order-recording and data race detection
Chip-multiprocessors are becoming the dominant vehicle for general-purpose processing, and parallel software will be needed to effectively utilize them. This parallel software is ...
Milos Prvulovic
215
Voted
HPCA
2006
IEEE
16 years 7 months ago
High performance file I/O for the Blue Gene/L supercomputer
Parallel I/O plays a crucial role for most data-intensive applications running on massively parallel systems like Blue Gene/L that provides the promise of delivering enormous comp...
Hao Yu, Ramendra K. Sahoo, C. Howson, G. Almasi, J...
203
Voted
RECOMB
2006
Springer
16 years 7 months ago
Inferring Positional Homologs with Common Intervals of Sequences
Inferring orthologous and paralogous genes is an important problem in whole genomes comparisons, both for functional or evolutionary studies. In this paper, we introduce a new appr...
Guillaume Blin, Annie Chateau, Cedric Chauve, Yann...
192
Voted
RECOMB
2006
Springer
16 years 7 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
235
Voted
RECOMB
2006
Springer
16 years 7 months ago
De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis
Abstract. Mapping intra-cellular signaling networks is a critical step in developing an understanding of and treatments for many devastating diseases. The predominant ways of disco...
Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahla...