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SODA
2008
ACM
110views Algorithms» more  SODA 2008»
15 years 8 months ago
Why simple hash functions work: exploiting the entropy in a data stream
Hashing is fundamental to many algorithms and data structures widely used in practice. For theoretical analysis of hashing, there have been two main approaches. First, one can ass...
Michael Mitzenmacher, Salil P. Vadhan
BMCBI
2007
114views more  BMCBI 2007»
15 years 7 months ago
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Background: False occurrences of functional motifs in protein sequences can be considered as random events due solely to the sequence composition of a proteome. Here we use a nume...
Allegra Via, Pier Federico Gherardini, Enrico Ferr...
BMCBI
2007
112views more  BMCBI 2007»
15 years 6 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
BMCBI
2004
115views more  BMCBI 2004»
15 years 6 months ago
Quantifying the relationship between co-expression, co-regulation and gene function
Background: It is thought that genes with similar patterns of mRNA expression and genes with similar functions are likely to be regulated via the same mechanisms. It has been diff...
Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte
BMCBI
2010
160views more  BMCBI 2010»
15 years 7 months ago
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
Background: Protein-protein interactions play a key role in biological processes of proteins within a cell. Recent high-throughput techniques have generated protein-protein intera...
Young-Rae Cho, Aidong Zhang